More Organic Reactions

on Sunday, October 9, 2011
  • Electrophilic Addition to Unsaturated Carbons
A carbon—carbon double or triple bond undergoes an addition reaction bonding a new atom or group of atoms to each of the carbons of the original multiple bond. One of the groups that adds to the multiple (π) bond is an electrophile, the other is a nucleophile. As an addition to a carbon—carbon multiple bond proceeds, the electrophile adds to the less highly substituted carbon, and the nucleophile adds to the more highly substituted carbon. This direction of adding is called Markovnikov's rule.

Hydrogen halides add to the π bonds of alkenes and alkynes to form organohalogen compounds. In a polar-protic solvent this reaction proceeds through a carbocation. In a polar-aprotic solvent the reaction proceeds through an AdE3 mechanism.

An acid-catalyzed addition of water is an AdE2 reaction and proceeds via a carbocation.

The oxymercuration reaction proceeds through an AdE2 reaction via a cyclic mercurinium ion intermediate. Nucleophilic substitution by water followed by reduction with NaBH4 produces an alcohol with net anti addition. The reaction is both stereospecific and regiospecific.

Hydroboration is a stereospecific and regiospecific syn addition to an alkene forming an organoborane. The organoborane can be oxidized to form an alcohol. The alcohol is the anti-Markovnikov product.

Halogens add to alkenes to form vicinal dihalides. For bromine, the reaction proceeds stereospecifically via a three-membered ring bromonium ion. With chlorine, the reaction is less stereospecific. The reaction does not work well with iodine. In a water solvent, the water competes with the bromine nucleophile and reacts with the bromonium ion to form a halohydrin product.

Catalytic hydrogenation reduces a multiple bond by adding hydrogen to the π bond. Catalysts such as platinum, palladium, or nickel are the most common ones in use. Hydrogen adds to the multiple bond to form an alkane.

  • Aliphatic Nucleophilic Substitution
An sp3 hybridized carbon undergoes nucleophilic substitution if it has a bond to an atom more electronegative than itself. Nucleophilic substitution at a saturated carbon atom follows one of two mechanisms. In the first mechanism, the leaving group departs before the nucleophile arrives. This is the SN1 mechanism. In the second mechanism, the leaving group departs as the nucleophile arrives. This is the SN2 mechanism. The rate for an SN1 mechanism depends only on the concentration of the substrate. Thus, an SN1 reaction follows first order kinetics and proceeds through a carbocation intermediate. The rate for an SN2 mechanism depends on the concentrations of both the nucleophile and the substrate. Thus, an SN2 reaction follows second order kinetics and is a concerted reaction. Because the SN1 mechanism has a symmetrical carbocation intermediate, it loses all stereochemical information in the reaction. The reaction proceeds with racemization of configuration. In the SN2 reaction, the nucleophile approaches from “behind” the leaving group resulting in an inversion of the configuration of the carbon in the substrate. In the inversion of configuration of the SN2 mechanism, the product has the opposite configuration of the starting material.

Nucleophiles and leaving groups are both bases. Usually, the leaving group is a weaker base than the nucleophile. Most good nucleophiles are soft bases. Reactions with both high solvent polarity and the ability of the solvent to solvate both the carbocation and the nucleophile promote SN1 reaction pathways. Low solvent polarity that does not stabilize carbocation formation promotes SN2 reaction pathways.

Halide nucleophiles react via either the SN1 or the SN2 mechanism depending on the substrate and reaction conditions.

Water and alcohols are good nucleophiles for solvolysis reactions. Their conjugate bases are good nucleophiles as well, but they tend to promote elimination reactions as side reactions to substitution reactions.


Organic Reactions

on Sunday, September 18, 2011

Organic reactions may be classified according to net result and mechanism.
Based on net result, the types of reactions are:
1. Substitution - an incoming atom or group of atoms replaces a leaving atom or group of atoms
AB + CD AC + BD
a. Nucleophilic Substitution - an atom or group of atoms in a molecule is replaced by a nucleophile
i. SN1 or Unimolecular Nucelophilic Substitution
ii. SN2 or Bimolecular Nuceleophilic Substitution
b. Electrophilic Substitution - an electrophile attacks the carbanion of the substrate substitutiong one of the hydrogens or other groups
2. Addition - a molecule adds across a pi bond
A + B C
3. Elimination - one molecule is lost to give a pi bond
AB A + B
4. Rearrangement - constitutional change in carbon skeleton
Based on mechanism, reaction types are:
1. Polar Reactions - involves heterolytic bond cleavage (heterolytic - uneven breakage: all electrons go to one atom)
2. Radical Reactions - involves homolytic bond cleavage (homolytic - even breakage: one electron goes to each atom)

Chirality

on Tuesday, August 30, 2011
A chiral molecule has no internal plane of symmetry and has a non-superimposable mirror image. No matter how you turn it, it will never be the same as its mirror image. On the contrary, achiral molecules have identical and superimposable mirror images.



Conformations

Conformations are 3-dimensional shapes that can be taken by a molecule by rotating about single bonds.
  • In the planar conformation, everything is eclipsed. In an eclipsed conformation, the bonds have dihedral angles of zero degrees. This maximizes the energy and leads to instability. Steric hindrance of eclipsing interactions also lead to torsional strain or the resistance to rotation about a single bond.
  • In the chair conformation, everything is staggered. In a staggered conformation, the bonds have dihedral angles of 60 degrees. This minimizes the energy and thus leads to more stability.
  • All the conformations in between are partially eclipsed.
  • The Boat conformation has Flagpole interactions because axial groups attached to the head and tail of the boat clash.
  • The Twist-boat conformation lessens these Flagpole interactions in addition to reducing the number of eclipsed interactions.

Organic Nomenclature

on Sunday, August 14, 2011

The IUPAC (International Union of Pure and Applied Chemistry) system of naming is a set of logical rules used to eliminate problems caused by arbitrary naming. It's most important features include:
  1. The root or base which indicates the major chain or ring of carbon atoms found in the structure
  2. A suffix or other elements which designates the functional groups present in the compound
  3. Names of substituent groups that complete the molecular structure
On determining the major chain, one should first know the different terms used for differently numbered carbon chains.
code no. of carbon
meth 1
eth 2
prop 3
but 4
pent 5
hex 6

One should also familiarize himself/herself with the codes used when there is the presence of double bonds or single bonds.
code means
an contains only carbon-carbon single bonds
en contains a carbon-carbon double bond
Alkyl Groups
Members of alkyl groups are produced when you remove a hydrogen atom from members of a family of compounds called alkanes. For example, CH4 is called methane but upon removing one of its H atom, CH3 or methyl is produced.

Here's a table of functional group priorities for nomenclature.


Aromaticity

Six carbons once formed in a ring,
with sp2 hybridization.
The strain was relieved,
and all six achieved
electron delocalization.
‘The stability, itself is dramatic,’
said a puzzled o-chemist fanatic.
‘All these factors at work
just add a new perk.’
And thus was proclaimed aromatic.

D:

on Saturday, July 30, 2011
The first Ph Ch exam was hard. That was expected of course. What pains me though is that I hadn't been able to finish it. Anyway here's the reviewer I made for the said exam.

Sorry for the size. Just click on it to view it better. :)